Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
LGG | rs13384288 | chr2:228078416 | A/G | 0 | 407 | 15.72 | 13.23 | 1.23 | KM Plot |
LGG | rs13384428 | chr2:228078567 | A/G | 3.1E-12 | 404 | 15.7 | 14.43 | 1.48 | KM Plot |
LGG | rs13390165 | chr2:11118836 | C/T | 3.29E-6 | 407 | 15.67 | 14.03 | 5.93 | KM Plot |
LGG | rs13391788 | chr2:228073232 | G/T | 0 | 401 | 15.72 | 11.6 | 1.23 | KM Plot |
LGG | rs13391807 | chr2:228073389 | C/T | 0 | 405 | 15.72 | 13.23 | 1.23 | KM Plot |
LGG | rs13395069 | chr2:228073937 | G/A | 0 | 406 | 15.72 | 14.43 | 1.23 | KM Plot |
LGG | rs13396162 | chr2:228090111 | T/C | 0 | 406 | 15.7 | 14.43 | 1.27 | KM Plot |
LGG | rs13396314 | chr2:228090286 | T/C | 0 | 405 | 15.72 | 14.43 | 1.27 | KM Plot |
LGG | rs13396406 | chr2:228090348 | T/C | 0 | 406 | 15.7 | 14.43 | 1.27 | KM Plot |
LGG | rs13402097 | chr2:228075966 | C/T | 0 | 404 | 15.72 | 14.43 | 1.23 | KM Plot |
LGG | rs13402366 | chr2:228076009 | G/C | 0 | 406 | 15.72 | 14.43 | 1.23 | KM Plot |
LGG | rs13406107 | chr2:228077297 | C/T | 0 | 406 | 15.72 | 14.43 | 1.23 | KM Plot |
LGG | rs13408279 | chr2:228073882 | T/C | 0 | 405 | 15.72 | 13.23 | 1.23 | KM Plot |
LGG | rs1341741 | chr10:888073 | A/G | 0.000163 | 400 | 14.6 | 17.73 | 13.3 | KM Plot |
LGG | rs1341742 | chr10:888240 | T/C | 2.63E-5 | 403 | 14.9 | 17.73 | 12.17 | KM Plot |