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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs13384288 chr2:228078416 A/G 0 407 15.72 13.23 1.23 KM Plot
LGG rs13384428 chr2:228078567 A/G 3.1E-12 404 15.7 14.43 1.48 KM Plot
LGG rs13390165 chr2:11118836 C/T 3.29E-6 407 15.67 14.03 5.93 KM Plot
LGG rs13391788 chr2:228073232 G/T 0 401 15.72 11.6 1.23 KM Plot
LGG rs13391807 chr2:228073389 C/T 0 405 15.72 13.23 1.23 KM Plot
LGG rs13395069 chr2:228073937 G/A 0 406 15.72 14.43 1.23 KM Plot
LGG rs13396162 chr2:228090111 T/C 0 406 15.7 14.43 1.27 KM Plot
LGG rs13396314 chr2:228090286 T/C 0 405 15.72 14.43 1.27 KM Plot
LGG rs13396406 chr2:228090348 T/C 0 406 15.7 14.43 1.27 KM Plot
LGG rs13402097 chr2:228075966 C/T 0 404 15.72 14.43 1.23 KM Plot
LGG rs13402366 chr2:228076009 G/C 0 406 15.72 14.43 1.23 KM Plot
LGG rs13406107 chr2:228077297 C/T 0 406 15.72 14.43 1.23 KM Plot
LGG rs13408279 chr2:228073882 T/C 0 405 15.72 13.23 1.23 KM Plot
LGG rs1341741 chr10:888073 A/G 0.000163 400 14.6 17.73 13.3 KM Plot
LGG rs1341742 chr10:888240 T/C 2.63E-5 403 14.9 17.73 12.17 KM Plot